PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S00613.10
Common NameJCGZ_21099, LOC105645242
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family AP2
Protein Properties Length: 413aa    MW: 45388.8 Da    PI: 9.3354
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S00613.10genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.23.7e-1775134155
            AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng...kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                    s y+GV++++++gr++A+++d  ++n+   k+ k+++lg ++ +e Aa+a++ a++k++g
  Jcr4S00613.10  75 SIYRGVTRHRWTGRYEAHLWDkSTWNQnqnKKgKQVYLGAYDDEEAAARAYDLAALKYWG 134
                    57*******************766644468557*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008476.1E-1375134IPR001471AP2/ERF domain
SuperFamilySSF541714.32E-1775143IPR016177DNA-binding domain
SMARTSM003801.9E-2576148IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.7E-1576143IPR001471AP2/ERF domain
PROSITE profilePS5103220.12676142IPR001471AP2/ERF domain
PRINTSPR003674.0E-57788IPR001471AP2/ERF domain
PRINTSPR003674.0E-5124144IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 413 aa     Download sequence    Send to blast
MASSSSDPCL KPELGGGGGS SGGSAGGGGE SSEAVIANDQ LLLYRGLKKP KKERGCTAKE  60
RISKMPPCTA GKRSSIYRGV TRHRWTGRYE AHLWDKSTWN QNQNKKGKQV YLGAYDDEEA  120
AARAYDLAAL KYWGPGTLIN FPVTDYTRDL EEMQNVSREE YLASLRRKSS GFSRGISKYR  180
GLSRHGSYCI IAFKASSHAG RAADDPASES DYVGSLCFER KIDLTSYIKW WGSNKTRQAE  240
SISKSSEEAK HGYAEDVGGE LKTSEWAVQP TEPYQMPCLG MPIDGKKHKG SSFSALSILS  300
KSAAYKSLQE RASKKQENRT DNDENKNKNT NKMDYGKAVE KSTSHDNSNE RLGVALGMIG  360
GLSLQRNVYQ LTPFLPAPLL SNYNTIDPLV DPIHWTSLVP VLPTGLARNS EVD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012086183.10.0PREDICTED: AP2-like ethylene-responsive transcription factor At2g41710 isoform X1
SwissprotQ8GWK21e-151AP2L4_ARATH; AP2-like ethylene-responsive transcription factor At2g41710
TrEMBLA0A067JQ270.0A0A067JQ27_JATCU; Uncharacterized protein
STRINGPOPTR_0016s05670.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF60072936
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41710.11e-130AP2 family protein
Publications ? help Back to Top
  1. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]